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This dataset comprises measurements of microbial uptake activities of betaine and choline, particulate phase osmolytes, amplicon sequencing of marker genese involved in Nitrogenous-osmolyte catabolism, and single cell genome data. Water samples were collected from at the L4 station of the Western Channel Observatory between April 27, 2015 to April 24, 2017 using Niskin bottles attached to a rosette sampler deployed from the RV Plymouth Quest. Nitrogenous osmolytes (glycine betaine, choline and trimethylamine N-oxide are essential components for most organisms in the marine environment. They enable cells to exist in a salty environment, but also have several other proposed uses. The aim of the project is to understand the seasonal cycle of glycine betaine, trimethylamine N-oxide and choline at Station L4. The water samples were analysed for the microbial assimilation and dissimilation activities using 14C labelled betaine and choline, respectively. The data will be incorporated to the European Regional Seas Ecosystem Model (ERSEM) coupled with the hydrodynamic model General Ocean Turbulent Model (GOTM) to simulate the N-osmolyte cycling at the L4 station. The data were collected under the project Biogeochemical cycling of N-osmolytes in the surface ocean funded by NERC Discovery Science grants NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child). The grants were led by Dr Yin Chen, Dr Ruth Airs, and Dr Wei Huang respectively.
British Oceanographic Data Centre
| Other details | ||
| Internal code | Internally assigned metadata identifier | 8008 |
| Title | The title is used to provide a brief and precise description of the dataset such as 'Date', 'Originating organisation/programme', 'Location' and 'Type of survey'. All acronyms and abbreviations should be reproduced in full. | Biogeochemical cycling of Nitrogenous osmolytes in the surface ocean in the English Channel from 2015-2017 |
| Alternative title | The purpose of alternative title is to record any additional names by which the dataset may be known. | British Oceanographic Data Centre record 1048-NE-M002233-1 |
| File Identifier | The File Identifier is a code, preferably a GUID, that is globally unique and remains with the same metadata record even if the record is edited or transferred between portals or tools. | 01799895efc35ab49d3e04452c1052cd |
| Resource Identifier | This is the code assigned by the data owner. | EDMED7100 |
| Resource type | The resource type will likely be a dataset but could also be a series (collection of datasets with a common specification) or a service. | dataset |
| Start date | This describes the date the resource starts. This may only be the year if month and day are not known | 2015-04-27 |
| End date | This describes the date the resource ends. This may only be the year if month and day are not known | 2017-04-24 |
| Spatial resolution | This describes the spatial resolution of the dataset or the spatial limitations of the service. | inapplicable |
| Frequency of updates | This describes the frequency with which the resource is modified or updated i.e. a monitoring programme that samples once per year has a frequency that is described as 'annually'. | asNeeded |
| Abstract | The abstract provides a clear and brief statement of the content of the resource. | This dataset comprises measurements of microbial uptake activities of betaine and choline, particulate phase osmolytes, amplicon sequencing of marker genese involved in Nitrogenous-osmolyte catabolism, and single cell genome data. Water samples were collected from at the L4 station of the Western Channel Observatory between April 27, 2015 to April 24, 2017 using Niskin bottles attached to a rosette sampler deployed from the RV Plymouth Quest. Nitrogenous osmolytes (glycine betaine, choline and trimethylamine N-oxide are essential components for most organisms in the marine environment. They enable cells to exist in a salty environment, but also have several other proposed uses. The aim of the project is to understand the seasonal cycle of glycine betaine, trimethylamine N-oxide and choline at Station L4. The water samples were analysed for the microbial assimilation and dissimilation activities using 14C labelled betaine and choline, respectively. The data will be incorporated to the European Regional Seas Ecosystem Model (ERSEM) coupled with the hydrodynamic model General Ocean Turbulent Model (GOTM) to simulate the N-osmolyte cycling at the L4 station. The data were collected under the project Biogeochemical cycling of N-osmolytes in the surface ocean funded by NERC Discovery Science grants NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child). The grants were led by Dr Yin Chen, Dr Ruth Airs, and Dr Wei Huang respectively. |
| Lineage | Lineage includes the background information, history of the sources of data, data quality statements and methods. | This dataset was created by scientists for the NERC Discovery Science project titled ‘Biogeochemical cycling of N-osmolytes in the surface ocean’ with grant references NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child) following their in-house data processing and quality control procedures. The data were then provided to the British Oceanographic Data Centre (BODC) for long-term archive and data publication in the BODC Published Data Library as well as ingestion into the BODC NODB. |
| Related keywords | ||
| Keyword | General subject area(s) associated with the resource, uses multiple controlled vocabularies | Oceanographic geographical features |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Natural Environment Research Council Designated Data Centres | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Marine Environmental Data and Information Network | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Uptake of other nutrients in the water column | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | unknown | |
| Geographical coverage | ||
| North | The northern-most limit of the data resource in decimal degrees | 50.25 |
| East | The eastern-most limit of the data resource in decimal degrees | 4.2172 |
| South | The southern-most limit of the data resource in decimal degrees | 50.25 |
| West | The western-most limit of the data resource in decimal degrees | 4.2172 |
| Responsible organisations | ||
| Role | The point of contact is person or organisation with responsibility for the creation and maintenance of the metadata for the resource. | pointOfContact |
| Organisation name | British Oceanographic Data Centre | |
| Individual name | Polly Hadžiabdic | |
| Position name | Head of the BODC Requests Team | |
| Delivery point | Joseph Proudman Building, 6 Brownlow Street | |
| Postal code | L3 5DA | |
| City | Liverpool | |
| Administrative area | Merseyside | |
| Country | United Kingdom | |
| URL | https://www.bodc.ac.uk/ | |
| Role | The owner is the person or organisation that owns the resource. | owner |
| Organisation name | Plymouth Marine Laboratory | |
| Individual name | Unknown | |
| Position name | Unknown | |
| Phone | +44 (0)1752 633 100 | |
| Delivery point | Prospect Place, The Hoe | |
| Postal code | PL1 3DH | |
| City | Plymouth | |
| Administrative area | England | |
| Country | United Kingdom | |
| URL | http://www.pml.ac.uk | |
| Role | The originator is the person or organisation who created, collected or produced the resource. | originator |
| Organisation name | Plymouth Marine Laboratory | |
| Individual name | Unknown | |
| Position name | Unknown | |
| Phone | +44 (0)1752 633 100 | |
| Delivery point | Prospect Place, The Hoe | |
| Postal code | PL1 3DH | |
| City | Plymouth | |
| Administrative area | England | |
| Country | United Kingdom | |
| URL | http://www.pml.ac.uk | |
| Role | The owner is the person or organisation that owns the resource. | owner |
| Organisation name | University of Oxford Department of Engineering Science | |
| Individual name | Unknown | |
| Position name | Unknown | |
| Phone | +44 (0)1865 273000 | |
| Delivery point | Parks Road | |
| City | Oxford | |
| Administrative area | Oxfordshire | |
| Country | United Kingdom | |
| URL | http://www.eng.ox.ac.uk/ | |
| Role | The originator is the person or organisation who created, collected or produced the resource. | originator |
| Organisation name | University of Oxford Department of Engineering Science | |
| Individual name | Unknown | |
| Position name | Unknown | |
| Phone | +44 (0)1865 273000 | |
| Delivery point | Parks Road | |
| City | Oxford | |
| Administrative area | Oxfordshire | |
| Country | United Kingdom | |
| URL | http://www.eng.ox.ac.uk/ | |
| Role | The owner is the person or organisation that owns the resource. | owner |
| Organisation name | University of Warwick, Department of Biological Sciences | |
| Individual name | Unknown | |
| Position name | Unknown | |
| Phone | +44 (0)2476 523517 | |
| Delivery point | Gibbet Hill Road | |
| Postal code | CV4 7AL | |
| City | Coventry | |
| Administrative area | Warwickshire | |
| Country | United Kingdom | |
| URL | http://www2.warwick.ac.uk/fac/sci/bio/ | |
| Role | The originator is the person or organisation who created, collected or produced the resource. | originator |
| Organisation name | University of Warwick, Department of Biological Sciences | |
| Individual name | Unknown | |
| Position name | Unknown | |
| Phone | +44 (0)2476 523517 | |
| Delivery point | Gibbet Hill Road | |
| Postal code | CV4 7AL | |
| City | Coventry | |
| Administrative area | Warwickshire | |
| Country | United Kingdom | |
| URL | http://www2.warwick.ac.uk/fac/sci/bio/ | |
| Role | The custodian is the person or organisation that accepts responsibility for the resource and ensures appropriate care and maintenance. If a dataset has been lodged with a Data Archive Centre for maintenance then this organisation is be entered here. | custodian |
| Organisation name | British Oceanographic Data Centre | |
| Position name | Director | |
| Delivery point | Joseph Proudman Building, 6 Brownlow Street | |
| Postal code | L3 5DA | |
| City | Liverpool | |
| Administrative area | Merseyside | |
| Country | United Kingdom | |
| URL | https://www.bodc.ac.uk/ | |
| Role | The distributor is the person or organisation that distributes the resource. | distributor |
| Organisation name | British Oceanographic Data Centre | |
| Position name | Director | |
| Delivery point | Joseph Proudman Building, 6 Brownlow Street | |
| Postal code | L3 5DA | |
| City | Liverpool | |
| Administrative area | Merseyside | |
| Country | United Kingdom | |
| URL | https://www.bodc.ac.uk/ | |
| Resource locators | ||
| Locator URL | Web address (URL) that links to the resource | https://www.bodc.ac.uk/data/published_data_library/catalogue/10.5285/c4bcd70b-e380-72c1-e053-6c86abc01060/ |
| Locator name | Name of the web resource | Published dataset - doi:10.5285/c4bcd70b-e380-72c1-e053-6c86abc01060 |
| Locator function | Code that describes the function of the resource. ISO function code chosen from ISO 19115-1 Codelist | download |
| Locator URL | Web address (URL) that links to the resource | https://doi.org/10.5281/zenodo.4288840 |
| Locator name | Name of the web resource | Dataset Web Site |
| Locator function | Code that describes the function of the resource. ISO function code chosen from ISO 19115-1 Codelist | information |
| Dataset constraints | ||
| 20.1 Limitations on Public Access - Access constraints | Any restrictions imposed on accessing the resource such as the need to agree to certain licence conditions. | otherRestrictions |
| 20.2 Limitations on Public Access - Other constraints | http://inspire.ec.europa.eu/metadata-codelist/LimitationsOnPublicAccess/NoLimitations | |
| Data are only available on the basis of case-by-case negotiation for usage | ||
| 21.1 Conditions for Access and Use - Use constraints | Any restrictions imposed on accessing the resource such as the need to agree to certain licence conditions. | otherRestrictions |
| 21.2 Conditions for Access and Use - Other constraints | Usage restrictions are specified in the terms of the licence | |
| Version info | ||
| Date of publication | The publication date of the resource or if previously unpublished the date that the resource was made publicly available via the MEDIN network. | 2022-02-18 |
| Date of last revision | The most recent date that the resource was revised. | 2021-01-05 |
| Date of creation | The date that the resource was created. | 2021-01-05 |
| Metadata date | The date when the content of this metadata record was last updated. | 2022-02-18 |
| Metadata standard name | The name of the metadata standard used to create this metadata | MEDIN |
| Metadata standard version | The version of the MEDIN Discovery Metadata Standard used to create the metadata record | 3.1.1 |
© OpenStreetMap contributors