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This dataset contains 3 csv files. One file (South_Africa_Biota_Microplastics.csv) reports the microplastic abundance in biota samples (anchovies, redeye round herring and sardines) collected and analysed in South Africa in 2019. The file contains data of the samples weight, length and number of microplastic items found. Fish is ordered by 'stratum' (geographical reference, please see South_Africa_Biota_Microplastics_Strata.doc). Fish of the same species in the same stratum were also stored in bags and a blank was measured in the lab to assess contamination while working with specimens from the same bag. Blank values are also reported. in the file. The file also reports information for each sample. Since fish populations were homogeneous in size and shape, body weight and length were recorded for only 5 individuals per bag, and averaged values are reported for all fish from that bag. Stomach weight was measured individually for all specimens. For sardines in strata E and F the lengths and weights of each fish were measured, allowing for further analysis on the health effects of microplastics in sardines. The file South_Africa_Biota_Microplastics_FishMeasurements.csv reports body weights and length of the specimen actually measured in each bag. A third file (South_Africa_Biota_Microplastics_FTIR.csv) contains the profiles of the ATR-FT-IR spectrum analysis of plastic pieces found in the fish stomachs., plus two profiles of known plastic for quality check A README text file contains the legend of the columns of the three csv files. The pictures of the plastic particles analysed with ATR-FT-IR can be obtained inquiring the data steward.
Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS)
| Other details | ||
| Internal code | Internally assigned metadata identifier | 10890 |
| Title | The title is used to provide a brief and precise description of the dataset such as 'Date', 'Originating organisation/programme', 'Location' and 'Type of survey'. All acronyms and abbreviations should be reproduced in full. | CLiP South Africa Microplastics in biota 2019 |
| File Identifier | The File Identifier is a code, preferably a GUID, that is globally unique and remains with the same metadata record even if the record is edited or transferred between portals or tools. | CEFASd850b418-61a1-43dc-bf02-12f3fb82e4f3 |
| Resource Identifier | This is the code assigned by the data owner. | CEFAS20476 |
| Resource type | The resource type will likely be a dataset but could also be a series (collection of datasets with a common specification) or a service. | dataset |
| Start date | This describes the date the resource starts. This may only be the year if month and day are not known | 2019-06-04 |
| End date | This describes the date the resource ends. This may only be the year if month and day are not known | 2019-07-04 |
| Frequency of updates | This describes the frequency with which the resource is modified or updated i.e. a monitoring programme that samples once per year has a frequency that is described as 'annually'. | notPlanned |
| Abstract | The abstract provides a clear and brief statement of the content of the resource. | This dataset contains 3 csv files. One file (South_Africa_Biota_Microplastics.csv) reports the microplastic abundance in biota samples (anchovies, redeye round herring and sardines) collected and analysed in South Africa in 2019. The file contains data of the samples weight, length and number of microplastic items found. Fish is ordered by 'stratum' (geographical reference, please see South_Africa_Biota_Microplastics_Strata.doc). Fish of the same species in the same stratum were also stored in bags and a blank was measured in the lab to assess contamination while working with specimens from the same bag. Blank values are also reported. in the file. The file also reports information for each sample. Since fish populations were homogeneous in size and shape, body weight and length were recorded for only 5 individuals per bag, and averaged values are reported for all fish from that bag. Stomach weight was measured individually for all specimens. For sardines in strata E and F the lengths and weights of each fish were measured, allowing for further analysis on the health effects of microplastics in sardines. The file South_Africa_Biota_Microplastics_FishMeasurements.csv reports body weights and length of the specimen actually measured in each bag. A third file (South_Africa_Biota_Microplastics_FTIR.csv) contains the profiles of the ATR-FT-IR spectrum analysis of plastic pieces found in the fish stomachs., plus two profiles of known plastic for quality check A README text file contains the legend of the columns of the three csv files. The pictures of the plastic particles analysed with ATR-FT-IR can be obtained inquiring the data steward. |
| Lineage | Lineage includes the background information, history of the sources of data, data quality statements and methods. | The Commonwealth Litter Project (CLiP) supported Belize to take action on plastics entering the oceans. The assessment of microplastics in biota was part of the action plan to define scientific baselines for future monitoring purposes and comparison. Samples of anchovies (Engraulis encrasicolus, 178 specimens), redeye round herring (Etrumeus whiteheadi, 188 specimens) and sardines (Sardinops sagax, 227 specimens) were collected during the 36th Pelagic recruit survey in 2019 carried out on board of the R.S. Africana by the South African Department of Agriculture, Forestry and Fisheries (DAFF). Samples were fished in an inshore area along the SA coastline limited by the Orange River mouth (West Coast) and George (South Coast) and divided in seven areas (strata). In the lab, stomachs were removed, rinsed and chemically digested by a 30 percent KOH:NaClO solution with an incubation period of 24 hours at 40 degrees centigrade. All samples were then filtered, stained with Red Nile dye and a digital image was acquired through a microscope. Number of particles was counted and corrected for particles count in blank samples. Visible particles were analysed using ATR-FT-IR to identify polymer composition, comparing their spectrum to a polymers library. ATR-FT-IR is the attenuated total reflection Fourier Transform infrared spectroscopy. A Thermo Fisher Scientific Nicolet iS5 ATR-FTIR with an OMNIC software (version 9.9.473) was used and polymers were identified based on the percentage match of IR spectra to a polymer library. Only spectra matched greater than 70 percent were accepted. Spectra were collected in the range 4000 – 650 1/cm at a resolution of 4 1/cm. |
| Related keywords | ||
| Keyword | General subject area(s) associated with the resource, uses multiple controlled vocabularies | Litter abundance and type |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Habitats and biotopes | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Unknown | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Marine Environmental Data and Information Network | |
| Geographical coverage | ||
| North | The northern-most limit of the data resource in decimal degrees | -20 |
| East | The eastern-most limit of the data resource in decimal degrees | 40 |
| South | The southern-most limit of the data resource in decimal degrees | -40 |
| West | The western-most limit of the data resource in decimal degrees | 10 |
| Responsible organisations | ||
| Role | The point of contact is person or organisation with responsibility for the creation and maintenance of the metadata for the resource. | pointOfContact |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| Role | The originator is the person or organisation who created, collected or produced the resource. | originator |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| Role | The custodian is the person or organisation that accepts responsibility for the resource and ensures appropriate care and maintenance. If a dataset has been lodged with a Data Archive Centre for maintenance then this organisation is be entered here. | custodian |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| Role | The distributor is the person or organisation that distributes the resource. | distributor |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| Role | The owner is the person or organisation that owns the resource. | owner |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Role | The owner is the person or organisation that owns the resource. | owner |
| Organisation name | Department for Environment, Food and Rural Affairs (DEFRA) | |
| Resource locators | ||
| Locator URL | Web address (URL) that links to the resource | https://data.cefas.co.uk/view/20476 |
| Locator name | Name of the web resource | Cefas Data Portal |
| Dataset constraints | ||
| 20.1 Limitations on Public Access - Access constraints | Any restrictions imposed on accessing the resource such as the need to agree to certain licence conditions. | otherRestrictions |
| 20.2 Limitations on Public Access - Other constraints | https://inspire.ec.europa.eu/metadata-codelist/LimitationsOnPublicAccess/ | |
| 21.1 Conditions for Access and Use - Use constraints | Any restrictions imposed on accessing the resource such as the need to agree to certain licence conditions. | otherRestrictions |
| 21.2 Conditions for Access and Use - Other constraints | http://standards.iso.org/ittf/PubliclyAvailableStandards/ISO_19139_Schemas/resources/codelist/gmxCodelists.xml#MD_RestrictionCode | |
| Version info | ||
| Date of publication | The publication date of the resource or if previously unpublished the date that the resource was made publicly available via the MEDIN network. | 2020-04-09 |
| Date of last revision | The most recent date that the resource was revised. | 2023-05-17 |
| Date of creation | The date that the resource was created. | 2020-03-31 |
| Metadata date | The date when the content of this metadata record was last updated. | 2023-05-17 |
| Metadata standard name | The name of the metadata standard used to create this metadata | MEDIN |
| Metadata standard version | The version of the MEDIN Discovery Metadata Standard used to create the metadata record | 3.1.1 |
© OpenStreetMap contributors