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Metadata: Dietary metabarcoding reads from stomachs of fish found in the Irish Sea, Celtic Sea, English Channel, and North Sea from 2015 to 2016
Abstract:
Raw sequences produced in 2018 from the stomach samples of lemon sole (n=16), herring (n=36), whiting (n=27), plaice (n=24), haddock (n=15), saithe (n=20), horse mackerel (n=15), grey gurnard(n=15), and mackerel (n=38). Samples were obtained from the North Sea, Eastern channel, and Irish and Celtic Seas. The sequences were analysed using a MiSeq benchtop sequencer.
Data holder:
Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS)
| Other details | ||
| Internal code | Internally assigned metadata identifier | 9371 |
| Title | The title is used to provide a brief and precise description of the dataset such as 'Date', 'Originating organisation/programme', 'Location' and 'Type of survey'. All acronyms and abbreviations should be reproduced in full. | Dietary metabarcoding reads from stomachs of fish found in the Irish Sea, Celtic Sea, English Channel, and North Sea from 2015 to 2016 |
| File Identifier | The File Identifier is a code, preferably a GUID, that is globally unique and remains with the same metadata record even if the record is edited or transferred between portals or tools. | CEFAS2c27ff32-858c-470e-9a52-01956b49e63c |
| Resource Identifier | This is the code assigned by the data owner. | CEFAS21645 |
| Resource type | The resource type will likely be a dataset but could also be a series (collection of datasets with a common specification) or a service. | dataset |
| Start date | This describes the date the resource starts. This may only be the year if month and day are not known | 2026-04-17 |
| End date | This describes the date the resource ends. This may only be the year if month and day are not known | 2023-03-01 |
| Frequency of updates | This describes the frequency with which the resource is modified or updated i.e. a monitoring programme that samples once per year has a frequency that is described as 'annually'. | notPlanned |
| Abstract | The abstract provides a clear and brief statement of the content of the resource. | Raw sequences produced in 2018 from the stomach samples of lemon sole (n=16), herring (n=36), whiting (n=27), plaice (n=24), haddock (n=15), saithe (n=20), horse mackerel (n=15), grey gurnard(n=15), and mackerel (n=38). Samples were obtained from the North Sea, Eastern channel, and Irish and Celtic Seas. The sequences were analysed using a MiSeq benchtop sequencer. |
| Lineage | Lineage includes the background information, history of the sources of data, data quality statements and methods. | Full details are available in 5.3 of `*Resolving the role of jellyfish in marine food webs*`_. In brief: fish stomach samples were obtained from North Sea International Beam Trawl Survey (IBTS) (8 August – 6th September 2016), Eastern channel beam trawl (17th– 30th July 2016), and the Poseidon (3rd -21stOctober 2015) research cruises were collected aboard the RV Cefas Endeavour. Samples from the Celtic sea herring acoustic survey (CSHAS) (7th-27th October 2016) were collected aboard the RV Celtic explorer. Stomachs were removed and the contents DNA was extracted by salt for Poseidon samples, and CTAB DNA extraction for all other samples. 1st round PCRS were conducted using two sets of primers: ILF_ProSSU3 (18s) and Uni-Minibar (COI). Second round PCR attached unique nucleotide indexes. Samples were sequenced on MiSeq and demultiplexed at Sheffield diagnostic genetics services. .. _`resolving the role of jellyfish in marine food webs`: https://ueaeprints.uea.ac.uk/id/eprint/69971/1/2019LambPPhD.pdf |
| Related keywords | ||
| Keyword | General subject area(s) associated with the resource, uses multiple controlled vocabularies | Molecular biology |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Species distribution | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Inapplicable | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | Marine Environmental Data and Information Network | |
| General subject area(s) associated with the resource, uses multiple controlled vocabularies | data.gov.uk | |
| Geographical coverage | ||
| North | The northern-most limit of the data resource in decimal degrees | 60.5 |
| East | The eastern-most limit of the data resource in decimal degrees | 5 |
| South | The southern-most limit of the data resource in decimal degrees | 49 |
| West | The western-most limit of the data resource in decimal degrees | -11 |
| Responsible organisations | ||
| Role | The point of contact is person or organisation with responsibility for the creation and maintenance of the metadata for the resource. | pointOfContact |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| data.manager@cefas.co.uk | ||
| Role | The originator is the person or organisation who created, collected or produced the resource. | originator |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| data.manager@cefas.co.uk | ||
| Role | The custodian is the person or organisation that accepts responsibility for the resource and ensures appropriate care and maintenance. If a dataset has been lodged with a Data Archive Centre for maintenance then this organisation is be entered here. | custodian |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| data.manager@cefas.co.uk | ||
| Role | The distributor is the person or organisation that distributes the resource. | distributor |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| Delivery point | Cefas Lowestoft Laboratory, Pakefield Road | |
| Postal code | NR33 0HT | |
| City | Lowestoft | |
| Administrative area | Suffolk | |
| Country | UK | |
| data.manager@cefas.co.uk | ||
| Role | The owner is the person or organisation that owns the resource. | owner |
| Organisation name | Centre for Environment, Fisheries and Aquaculture Science, Lowestoft Laboratory (CEFAS) | |
| data.manager@cefas.co.uk | ||
| Resource locators | ||
| Locator URL | Web address (URL) that links to the resource | https://data.cefas.co.uk/view/21645 |
| Locator name | Name of the web resource | Cefas Data Portal |
| Dataset constraints | ||
| 20.1 Limitations on Public Access - Access constraints | This states `otherRestrictions` from ISO vocabulary RestrictionCode and is an INSPIRE/GEMINI requirement. | otherRestrictions |
| 20.2 Limitations on Public Access - Other constraints | noLimitations | |
| 21.1 Conditions for Access and Use - Use constraints | This states `otherRestrictions` from ISO vocabulary RestrictionCode and is an INSPIRE/GEMINI requirement. | otherRestrictions |
| 21.2 Conditions for Access and Use - Other constraints | https://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/ | |
| Version info | ||
| Date of publication | The publication date of the resource or if previously unpublished the date that the resource was made publicly available via the MEDIN network. | 2023-03-01 |
| Date of last revision | The most recent date that the resource was revised. | 2023-03-01 |
| Date of creation | The date that the resource was created. | 2023-02-24 |
| Harvest date | The date which this record has been (re)harvested from the provider. | 2026-04-12 |
| Metadata date | The date when the content of this metadata record was last updated. | 2023-03-01 |
| Metadata standard name | The name of the metadata standard used to create this metadata | MEDIN |
| Metadata standard version | The version of the MEDIN Discovery Metadata Standard used to create the metadata record | 3.1.1 |